Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-methyl-2-oxobutanoate hydroxymethyltransferase | RHPLAN_RS00740 | Not Available | Positive | 165347 - 166156 | 28292.0 |
| hypothetical protein | RHPLAN_RS00745 | Not Available | Positive | 166164 - 166457 | 11611.4 |
| abc transporter substrate-binding protein | RHPLAN_RS00750 | Not Available | Positive | 166486 - 167367 | 31373.4 |
| hypothetical protein | RHPLAN_RS00755 | Not Available | Negative | 167371 - 167667 | 11318.7 |
| hypothetical protein | RHPLAN_RS40065 | Not Available | Positive | 167773 - 167970 | 6768.07 |
| amidase | RHPLAN_RS00765 | Not Available | Positive | 167937 - 169376 | 51510.8 |
| tripartite tricarboxylate transporter substrate binding protein | RHPLAN_RS00770 | Not Available | Positive | 169393 - 170361 | 34223.6 |
| zinc-binding dehydrogenase | RHPLAN_RS00775 | Not Available | Positive | 170373 - 171482 | 40354.0 |
| pdxa family protein | RHPLAN_RS00780 | Not Available | Positive | 171490 - 172446 | 32746.0 |
| is110 family transposase | RHPLAN_RS00785 | Not Available | Positive | 172733 - 173665 | 33431.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.