Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna (guanosine(46)-n(7))-methyltransferase trmb | RHPLAN_RS00540 | Not Available | Positive | 119689 - 120381 | 26338.6 |
| duf2336 domain-containing protein | RHPLAN_RS00545 | Not Available | Negative | 120391 - 121479 | 39249.5 |
| ribosome maturation factor rimp | RHPLAN_RS00550 | Not Available | Positive | 121762 - 122451 | 24969.7 |
| transcription termination factor nusa | RHPLAN_RS00555 | Not Available | Positive | 122455 - 124065 | 59106.0 |
| rna-binding protein | RHPLAN_RS00560 | Not Available | Positive | 124086 - 124754 | 23570.6 |
| translation initiation factor if-2 | RHPLAN_RS00565 | Not Available | Positive | 124771 - 127461 | 96955.6 |
| 30s ribosome-binding factor rbfa | RHPLAN_RS00570 | Not Available | Positive | 127616 - 128047 | 16617.9 |
| trna pseudouridine(55) synthase trub | RHPLAN_RS00575 | Not Available | Positive | 128040 - 129137 | 39329.8 |
| 30s ribosomal protein s15 | RHPLAN_RS00580 | Not Available | Positive | 129141 - 129410 | 10287.5 |
| polyribonucleotide nucleotidyltransferase | RHPLAN_RS00585 | Not Available | Positive | 129663 - 131828 | 78388.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.