Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cupin domain-containing protein | RHPLAN_RS05425 | Not Available | Positive | 1173859 - 1174398 | 19229.4 |
| dihydrodipicolinate synthase family protein | RHPLAN_RS05430 | Not Available | Negative | 1174402 - 1175355 | 34502.9 |
| bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-o-methyltransferase ubig | RHPLAN_RS05435 | Not Available | Negative | 1175476 - 1177020 | 57066.5 |
| tetratricopeptide repeat protein | RHPLAN_RS05440 | Not Available | Negative | 1177024 - 1177941 | 33316.6 |
| hypothetical protein | RHPLAN_RS05445 | Not Available | Negative | 1178241 - 1179230 | 37815.5 |
| penicillin-binding protein 1a | RHPLAN_RS05450 | Not Available | Negative | 1179282 - 1182197 | 107313.0 |
| xaa-pro peptidase family protein | RHPLAN_RS05455 | Not Available | Positive | 1182416 - 1183615 | 44398.2 |
| tripartite tricarboxylate transporter tctb family protein | RHPLAN_RS05460 | Not Available | Positive | 1183786 - 1184457 | 24260.1 |
| tripartite tricarboxylate transporter permease | RHPLAN_RS05465 | Not Available | Positive | 1184458 - 1186023 | 55602.6 |
| duf3500 domain-containing protein | RHPLAN_RS05470 | Not Available | Negative | 1186031 - 1187410 | 51974.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.