Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| s9 family peptidase | RHPLAN_RS05375 | Not Available | Positive | 1163648 - 1164901 | 46861.0 |
| psif family protein | RHPLAN_RS05380 | Not Available | Positive | 1164981 - 1165229 | 8494.33 |
| fad-dependent monooxygenase | RHPLAN_RS05385 | Not Available | Negative | 1165243 - 1166841 | 57829.2 |
| hypothetical protein | RHPLAN_RS05390 | Not Available | Negative | 1166874 - 1167188 | 11771.9 |
| carboxymuconolactone decarboxylase family protein | RHPLAN_RS05395 | Not Available | Negative | 1167221 - 1167766 | 20175.4 |
| gmc family oxidoreductase | RHPLAN_RS05400 | Not Available | Negative | 1167798 - 1169429 | 59395.9 |
| class ii aldolase/adducin family protein | RHPLAN_RS05405 | Not Available | Positive | 1169523 - 1170242 | 25452.7 |
| class ii aldolase/adducin family protein | RHPLAN_RS05410 | Not Available | Positive | 1170293 - 1170976 | 25486.5 |
| lytic transglycosylase domain-containing protein | RHPLAN_RS05415 | Not Available | Positive | 1171179 - 1172816 | 59043.4 |
| shikimate dehydrogenase | RHPLAN_RS05420 | Not Available | Negative | 1172903 - 1173745 | 30289.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.