Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | RHPLAN_RS05325 | Not Available | Positive | 1151402 - 1151608 | 7448.99 |
| aromatic ring-hydroxylating dioxygenase subunit alpha | RHPLAN_RS05330 | Not Available | Positive | 1151624 - 1152676 | 39364.7 |
| ornithine cyclodeaminase family protein | RHPLAN_RS05335 | Not Available | Positive | 1152748 - 1153734 | 35594.8 |
| tripartite tricarboxylate transporter substrate binding protein | RHPLAN_RS05340 | Not Available | Positive | 1153767 - 1154744 | 34280.6 |
| ubid family decarboxylase | RHPLAN_RS05345 | Not Available | Negative | 1154957 - 1156438 | 54381.1 |
| tripartite tricarboxylate transporter substrate binding protein | RHPLAN_RS05350 | Not Available | Negative | 1156450 - 1157418 | 34408.8 |
| tripartite tricarboxylate transporter substrate binding protein | RHPLAN_RS05355 | Not Available | Negative | 1157509 - 1158483 | 34222.3 |
| xanthine dehydrogenase family protein molybdopterin-binding subunit | RHPLAN_RS05360 | Not Available | Negative | 1158557 - 1160890 | 82981.4 |
| gluconate 2-dehydrogenase subunit 3 family protein | RHPLAN_RS05365 | Not Available | Positive | 1161006 - 1161731 | 25919.8 |
| gmc family oxidoreductase | RHPLAN_RS05370 | Not Available | Positive | 1161745 - 1163517 | 65048.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.