Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Hyphomicrobiales
Family
Nitrobacteraceae
Genus
Rugositalea
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Hyphomicrobiales |
| Family | Nitrobacteraceae |
| Genus | Rugositalea |
| Species | Rugositalea oryzae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Agricultural land |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1494756 bp
Thymine Count
1493847 bp
Guanine Count
2602526 bp
Cytosine Count
2602760 bp
Genome Length
8193889 bp
Protein-coding Genes
7713 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lvivd repeat-containing protein | RHPLAN_RS05080 | Not Available | Negative | 1103062 - 1104246 | 43441.6 |
| thiamine pyrophosphate-binding protein | RHPLAN_RS05085 | Not Available | Negative | 1104321 - 1106129 | 64822.7 |
| abc transporter substrate-binding protein | RHPLAN_RS05090 | Not Available | Negative | 1106150 - 1107121 | 34845.0 |
| llm class flavin-dependent oxidoreductase | RHPLAN_RS05095 | Not Available | Positive | 1107246 - 1108355 | 41375.5 |
| duf3311 domain-containing protein | RHPLAN_RS05100 | Not Available | Positive | 1108586 - 1108771 | 7512.23 |
| monocarboxylate uptake permease mctp | RHPLAN_RS05105 | Not Available | Positive | 1108761 - 1110248 | 52560.2 |
| hypothetical protein | RHPLAN_RS05110 | Not Available | Positive | 1110311 - 1110502 | 6650.99 |
| fmn-binding glutamate synthase family protein | RHPLAN_RS05115 | Not Available | Positive | 1110588 - 1112213 | 58875.3 |
| sdr family nad(p)-dependent oxidoreductase | RHPLAN_RS05120 | Not Available | Negative | 1112372 - 1113121 | 25882.3 |
| gfo/idh/moca family protein | RHPLAN_RS05125 | Not Available | Negative | 1113094 - 1114251 | 42214.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.