Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fad-binding domain-containing protein | RCA23_RS04830 | Not Available | Positive | 1010370 - 1011587 | 45058.6 |
| (2fe-2s)-binding protein | RCA23_RS04835 | Not Available | Positive | 1011944 - 1012426 | 17052.6 |
| xanthine dehydrogenase family protein molybdopterin-binding subunit | RCA23_RS04840 | Not Available | Positive | 1012438 - 1014798 | 83234.4 |
| xanthine dehydrogenase family protein subunit m | RCA23_RS04845 | Not Available | Positive | 1014811 - 1015602 | 27054.8 |
| aaa family atpase | RCA23_RS04850 | Not Available | Positive | 1015669 - 1016556 | 32834.7 |
| vwa domain-containing protein | RCA23_RS04855 | Not Available | Positive | 1016556 - 1017776 | 45094.8 |
| 5-deoxy-glucuronate isomerase | RCA23_RS04860 | Not Available | Positive | 1017882 - 1018688 | 29936.3 |
| azld domain-containing protein | RCA23_RS04865 | Not Available | Negative | 1018707 - 1019039 | 11835.1 |
| azlc family abc transporter permease | RCA23_RS04870 | Not Available | Negative | 1019036 - 1019743 | 24641.7 |
| citramalate synthase | RCA23_RS04875 | Not Available | Negative | 1019804 - 1021426 | 58827.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
