Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | RCA23_RS16650 | Not Available | Positive | 967261 - 967791 | 17919.7 |
| trna pseudouridine(38-40) synthase trua | RCA23_RS04640 | Not Available | Negative | 967816 - 968589 | 28701.2 |
| ycjx family protein | RCA23_RS04645 | Not Available | Positive | 968867 - 970279 | 50831.2 |
| gnat family n-acetyltransferase | RCA23_RS15930 | Not Available | Positive | 970276 - 970722 | 17280.3 |
| ycjf family protein | RCA23_RS04655 | Not Available | Positive | 970715 - 971731 | 36341.7 |
| isoleucine--trna ligase | RCA23_RS04660 | Not Available | Positive | 971937 - 974843 | 109380.0 |
| eama family transporter | RCA23_RS04665 | Not Available | Positive | 974910 - 975746 | 29431.2 |
| cdp-alcohol phosphatidyltransferase family protein | RCA23_RS04670 | Not Available | Negative | 975743 - 976432 | 25361.5 |
| tyrosine recombinase xerc | RCA23_RS04675 | Not Available | Negative | 976468 - 977406 | 33869.1 |
| duf484 family protein | RCA23_RS04680 | Not Available | Negative | 977416 - 978120 | 25550.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
