Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nuclear transport factor 2 family protein | RCA23_RS04385 | Not Available | Negative | 913617 - 914183 | 21203.3 |
| gntr family transcriptional regulator | RCA23_RS04390 | Not Available | Positive | 914328 - 915128 | 28962.0 |
| 3-isopropylmalate dehydratase large subunit | RCA23_RS04395 | Not Available | Positive | 915125 - 916531 | 50324.2 |
| 3-isopropylmalate dehydratase small subunit | RCA23_RS04400 | Not Available | Positive | 916531 - 917142 | 22128.1 |
| trap transporter substrate-binding protein dctp | RCA23_RS04405 | Not Available | Positive | 917203 - 918216 | 36833.9 |
| trap transporter small permease | RCA23_RS04410 | Not Available | Positive | 918273 - 918773 | 18602.1 |
| trap transporter large permease subunit | RCA23_RS04415 | Not Available | Positive | 918773 - 920080 | 46665.8 |
| nad(p)-dependent oxidoreductase | RCA23_RS04420 | Not Available | Positive | 920337 - 921674 | 46702.7 |
| nad-dependent dihydropyrimidine dehydrogenase subunit prea | RCA23_RS04425 | Not Available | Positive | 921674 - 922978 | 46634.7 |
| tetr family transcriptional regulator c-terminal domain-containing protein | RCA23_RS04430 | Not Available | Negative | 923021 - 923623 | 22903.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
