Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter atp-binding protein | RCA23_RS04240 | Not Available | Negative | 886068 - 887201 | 40408.5 |
| abc transporter atp-binding protein | RCA23_RS04245 | Not Available | Negative | 887194 - 887934 | 26878.6 |
| branched-chain amino acid abc transporter permease | RCA23_RS04250 | Not Available | Negative | 887931 - 888863 | 33933.3 |
| branched-chain amino acid abc transporter permease | RCA23_RS04255 | Not Available | Negative | 888860 - 889732 | 30539.7 |
| abc transporter substrate-binding protein | RCA23_RS04260 | Not Available | Negative | 889783 - 890982 | 42766.6 |
| 4-oxalomesaconate tautomerase | RCA23_RS04265 | Not Available | Negative | 891102 - 892175 | 37476.4 |
| 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase | RCA23_RS04270 | Not Available | Negative | 892168 - 892839 | 23663.8 |
| pig-l deacetylase family protein | RCA23_RS04275 | Not Available | Negative | 893019 - 893753 | 27838.9 |
| hypothetical protein | RCA23_RS16835 | Not Available | Negative | 893838 - 893963 | 4728.91 |
| tsup family transporter | RCA23_RS04280 | Not Available | Positive | 894275 - 894994 | 25423.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
