Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flagellar biosynthesis anti-sigma factor flgm | RCA23_RS04140 | Not Available | Positive | 863788 - 864087 | 10408.5 |
| hypothetical protein | RCA23_RS04145 | Not Available | Positive | 864117 - 864407 | 10777.8 |
| sel1 repeat family protein | RCA23_RS04150 | Not Available | Negative | 864425 - 865057 | 23510.8 |
| hypothetical protein | RCA23_RS04155 | Not Available | Negative | 865054 - 865443 | 14347.6 |
| sigma-54 interaction domain-containing protein | RCA23_RS04160 | Not Available | Positive | 865619 - 866770 | 42490.2 |
| flagellar filament capping protein flid | RCA23_RS04165 | Not Available | Negative | 866742 - 868379 | 56848.1 |
| ompa family protein | RCA23_RS04170 | Not Available | Negative | 868454 - 869677 | 43173.3 |
| motility protein a | RCA23_RS04175 | Not Available | Negative | 869716 - 870477 | 26793.7 |
| duf1566 domain-containing protein | RCA23_RS04180 | Not Available | Positive | 870634 - 871101 | 17636.3 |
| eama family transporter | RCA23_RS04185 | Not Available | Negative | 871126 - 871974 | 30738.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
