Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flagellar basal-body ms-ring/collar protein flif | RCA23_RS03985 | Not Available | Negative | 830663 - 832414 | 63282.6 |
| flagellar hook-basal body complex protein flie | RCA23_RS03990 | Not Available | Negative | 832457 - 832771 | 11329.6 |
| sigma 54-interacting transcriptional regulator | RCA23_RS03995 | Not Available | Negative | 832786 - 833940 | 41481.5 |
| flagellar basal body-associated flil family protein | RCA23_RS04000 | Not Available | Positive | 834232 - 834771 | 19378.3 |
| flagellar export chaperone flis | RCA23_RS04010 | Not Available | Positive | 835109 - 835480 | 14145.9 |
| hypothetical protein | RCA23_RS04015 | Not Available | Positive | 835599 - 836012 | 15391.1 |
| hypothetical protein | RCA23_RS04020 | Not Available | Positive | 836532 - 836771 | 9121.38 |
| flagellar hook-basal body protein | RCA23_RS04025 | Not Available | Negative | 836804 - 837607 | 27190.7 |
| chloride channel protein | RCA23_RS04030 | Not Available | Positive | 837665 - 839437 | 62178.8 |
| transglycosylase slt domain-containing protein | RCA23_RS15925 | Not Available | Negative | 839442 - 840278 | 30934.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
