Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| agmatine deiminase family protein | RCA23_RS00355 | Not Available | Negative | 76202 - 77368 | 42356.4 |
| cbs domain-containing protein | RCA23_RS16680 | Not Available | Negative | 77450 - 77644 | 7252.68 |
| yjbh domain-containing protein | RCA23_RS16685 | Not Available | Negative | 77945 - 79081 | 39214.3 |
| Trna-lys | Not Available | Not Available | Positive | 79477 - 79552 | Not Available |
| diaminopimelate epimerase | RCA23_RS00370 | Not Available | Positive | 79647 - 80468 | 29621.6 |
| trna (n(6)-l-threonylcarbamoyladenosine(37)-c(2))- methylthiotransferase mtab | RCA23_RS00375 | Not Available | Positive | 80465 - 81721 | 46143.5 |
| glutathione s-transferase | RCA23_RS00380 | Not Available | Positive | 81718 - 82368 | 24404.2 |
| laci family dna-binding transcriptional regulator | RCA23_RS00385 | Not Available | Negative | 82369 - 83391 | 37213.4 |
| hypothetical protein | RCA23_RS00395 | Not Available | Positive | 84298 - 84507 | 7114.71 |
| gyd domain-containing protein | RCA23_RS00400 | Not Available | Negative | 85304 - 85627 | 11362.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
