Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dipeptide abc transporter atp-binding protein | RCA23_RS03795 | Not Available | Positive | 792535 - 794106 | 56858.5 |
| p1 family peptidase | RCA23_RS03800 | Not Available | Positive | 794103 - 795125 | 34545.3 |
| aldehyde dehydrogenase family protein | RCA23_RS03805 | Not Available | Positive | 795131 - 796576 | 50040.4 |
| sdr family oxidoreductase | RCA23_RS03810 | Not Available | Positive | 796585 - 797325 | 25742.1 |
| amidase family protein | RCA23_RS03815 | Not Available | Positive | 797368 - 798825 | 51607.2 |
| cynx/nimt family mfs transporter | RCA23_RS03820 | Not Available | Negative | 799691 - 800908 | 42698.5 |
| amidohydrolase | RCA23_RS03825 | Not Available | Positive | 801403 - 802311 | 32304.6 |
| yjbh domain-containing protein | RCA23_RS03830 | Not Available | Positive | 802343 - 802852 | 20374.6 |
| is481 family transposase | RCA23_RS03835 | Not Available | Positive | 802913 - 803992 | 41054.3 |
| yjbh domain-containing protein | RCA23_RS16725 | Not Available | Positive | 804025 - 804228 | 8183.77 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
