Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yjbh domain-containing protein | RCA23_RS03750 | Not Available | Positive | 780388 - 780888 | 17784.6 |
| glycogen debranching protein glgx | RCA23_RS03755 | Not Available | Positive | 780903 - 782972 | 77738.3 |
| alpha-d-glucose phosphate-specific phosphoglucomutase | RCA23_RS03760 | Not Available | Positive | 783008 - 784639 | 57941.6 |
| alpha-glucosidase | RCA23_RS03765 | Not Available | Negative | 784641 - 786248 | 60008.3 |
| is6 family transposase | RCA23_RS03770 | Not Available | Positive | 786430 - 787128 | 27796.4 |
| yjbh domain-containing protein | RCA23_RS16720 | Not Available | Positive | 787207 - 787293 | 3392.31 |
| amidohydrolase | RCA23_RS03775 | Not Available | Positive | 787598 - 788764 | 42179.2 |
| abc transporter substrate-binding protein | RCA23_RS03780 | Not Available | Positive | 789260 - 790729 | 53037.8 |
| abc transporter permease subunit | RCA23_RS03785 | Not Available | Positive | 790741 - 791688 | 34375.2 |
| abc transporter permease | RCA23_RS03790 | Not Available | Positive | 791690 - 792535 | 29894.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
