Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tolc family protein | RCA23_RS03605 | Not Available | Negative | 751595 - 752950 | 49017.1 |
| hypothetical protein | RCA23_RS15910 | Not Available | Negative | 752955 - 754718 | 62431.6 |
| dtdp-4-dehydrorhamnose reductase | RCA23_RS03615 | Not Available | Negative | 754919 - 755773 | 30256.7 |
| dtdp-glucose 4,6-dehydratase | RCA23_RS03620 | Not Available | Negative | 755770 - 756831 | 39099.2 |
| dtdp-4-dehydrorhamnose 3,5-epimerase | RCA23_RS03625 | Not Available | Negative | 756838 - 757398 | 20339.2 |
| epsg family protein | RCA23_RS03630 | Not Available | Negative | 757435 - 758505 | 39582.3 |
| glycosyltransferase family 4 protein | RCA23_RS03635 | Not Available | Negative | 758505 - 759584 | 40446.0 |
| glycosyltransferase | RCA23_RS03640 | Not Available | Negative | 759905 - 761071 | 42845.9 |
| glycosyltransferase | RCA23_RS16390 | Not Available | Negative | 761430 - 762479 | 40085.2 |
| o-antigen translocase | RCA23_RS03650 | Not Available | Negative | 762492 - 764009 | 54205.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
