Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| is6 family transposase | RCA23_RS03550 | Not Available | Positive | 737522 - 738220 | 27755.7 |
| response regulator | RCA23_RS03555 | Not Available | Negative | 738397 - 739014 | 22663.3 |
| molybdopterin-dependent oxidoreductase | RCA23_RS03560 | Not Available | Positive | 739172 - 739651 | 17953.8 |
| atp-binding protein | RCA23_RS03565 | Not Available | Positive | 739694 - 742216 | 93434.8 |
| yjbh domain-containing protein | RCA23_RS03570 | Not Available | Positive | 742420 - 743241 | 29660.7 |
| polysaccharide biosynthesis tyrosine autokinase | RCA23_RS03575 | Not Available | Positive | 743502 - 745631 | 79688.1 |
| polysaccharide biosynthesis/export family protein | RCA23_RS03580 | Not Available | Positive | 745591 - 747042 | 53740.4 |
| vanz family protein | RCA23_RS03590 | Not Available | Positive | 747621 - 748013 | 13886.4 |
| hlyd family type i secretion periplasmic adaptor subunit | RCA23_RS03595 | Not Available | Negative | 748190 - 749473 | 47178.4 |
| peptidase domain-containing abc transporter | RCA23_RS03600 | Not Available | Negative | 749475 - 751598 | 76173.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
