Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sarcosine oxidase subunit beta family protein | RCA23_RS03505 | Not Available | Positive | 725308 - 726555 | 45979.0 |
| sarcosine oxidase subunit delta | RCA23_RS03510 | Not Available | Positive | 726567 - 726854 | 11185.0 |
| sarcosine oxidase subunit alpha family protein | RCA23_RS03515 | Not Available | Positive | 726851 - 729808 | 107151.0 |
| sarcosine oxidase subunit gamma | RCA23_RS03520 | Not Available | Positive | 729801 - 730364 | 20384.3 |
| dmt family transporter | RCA23_RS03525 | Not Available | Positive | 730372 - 731262 | 31438.4 |
| yjbh domain-containing protein | RCA23_RS16700 | Not Available | Positive | 731725 - 731874 | 5876.38 |
| phage integrase sam-like domain-containing protein | RCA23_RS03530 | Not Available | Positive | 732559 - 734097 | 58260.3 |
| amidase | RCA23_RS03535 | Not Available | Positive | 734370 - 735797 | 50563.4 |
| tyrosine-type recombinase/integrase | RCA23_RS03540 | Not Available | Negative | 735992 - 736558 | 21191.5 |
| atp-binding protein | RCA23_RS03545 | Not Available | Negative | 736745 - 737386 | 23980.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
