Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| voc family protein | RCA23_RS03065 | Not Available | Positive | 640216 - 640605 | 13762.3 |
| msmeg_1061 family fmn-dependent ppox-type flavoprotein | RCA23_RS03070 | Not Available | Positive | 640646 - 641269 | 22676.8 |
| acetyl-coa carboxylase carboxyltransferase subunit alpha | RCA23_RS03075 | Not Available | Negative | 641284 - 642246 | 35227.5 |
| l-malyl-coa/beta-methylmalyl-coa lyase | RCA23_RS03080 | Not Available | Negative | 642348 - 643307 | 34532.9 |
| n-acetyltransferase dgcn | RCA23_RS03085 | Not Available | Positive | 643594 - 644595 | 35539.9 |
| n-acetyl-d-glu racemase dgca | RCA23_RS03090 | Not Available | Positive | 644712 - 645674 | 34464.2 |
| d-amino-acid transaminase | RCA23_RS03095 | Not Available | Positive | 645679 - 646539 | 31287.4 |
| ompa family protein | RCA23_RS03100 | Not Available | Positive | 646631 - 648778 | 77536.5 |
| hypothetical protein | RCA23_RS15900 | Not Available | Positive | 648803 - 649246 | 16128.4 |
| duf1244 domain-containing protein | RCA23_RS03110 | Not Available | Negative | 649243 - 649536 | 11250.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
