Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lon peptidase substrate-binding domain-containing protein | RCA23_RS00255 | Not Available | Positive | 54410 - 55051 | 24536.4 |
| trm112 family protein | RCA23_RS00260 | Not Available | Positive | 55048 - 55233 | 6624.01 |
| fad-dependent monooxygenase | RCA23_RS00265 | Not Available | Negative | 55230 - 56447 | 43360.6 |
| amidase family protein | RCA23_RS00270 | Not Available | Positive | 56529 - 57857 | 47069.3 |
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | RCA23_RS00275 | Not Available | Positive | 57922 - 59085 | 42280.5 |
| dna translocase ftsk | RCA23_RS00280 | Not Available | Positive | 59099 - 61888 | 100151.0 |
| lola family protein | RCA23_RS00285 | Not Available | Positive | 61962 - 62549 | 21908.9 |
| transglycosylase slt domain-containing protein | RCA23_RS00290 | Not Available | Negative | 62720 - 63310 | 22151.8 |
| heat shock protein hspq | RCA23_RS00295 | Not Available | Positive | 63513 - 63836 | 12371.2 |
| gamma-glutamyltransferase family protein | RCA23_RS00300 | Not Available | Negative | 63833 - 65410 | 54668.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
