Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c peroxidase | RCA23_RS02610 | Not Available | Positive | 544496 - 545827 | 46816.5 |
| hypothetical protein | RCA23_RS02615 | Not Available | Negative | 545975 - 546982 | 37018.2 |
| crtac1 family protein | RCA23_RS02625 | Not Available | Negative | 547548 - 549014 | 52531.9 |
| rok family transcriptional regulator | RCA23_RS02630 | Not Available | Negative | 549011 - 550285 | 45840.9 |
| substrate-binding domain-containing protein | RCA23_RS02635 | Not Available | Positive | 550504 - 551532 | 35061.5 |
| sugar abc transporter permease | RCA23_RS02640 | Not Available | Positive | 551693 - 553006 | 46139.9 |
| atp-binding cassette domain-containing protein | RCA23_RS02645 | Not Available | Positive | 553018 - 553776 | 27014.6 |
| xylulokinase | RCA23_RS02650 | Not Available | Positive | 553780 - 555234 | 50777.6 |
| xylose isomerase | RCA23_RS02655 | Not Available | Positive | 555316 - 556617 | 48729.4 |
| malonate--coa ligase | RCA23_RS02660 | Not Available | Negative | 556625 - 558142 | 55066.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
