Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-isopropylmalate dehydratase large subunit | RCA23_RS02510 | Not Available | Negative | 526231 - 527634 | 50205.9 |
| helix-turn-helix domain-containing protein | RCA23_RS02515 | Not Available | Negative | 527848 - 528072 | 7945.94 |
| hypothetical protein | RCA23_RS02520 | Not Available | Negative | 528072 - 528605 | 20038.0 |
| ribosome silencing factor | RCA23_RS02525 | Not Available | Positive | 528844 - 529257 | 14781.6 |
| 23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmh | RCA23_RS02530 | Not Available | Positive | 529257 - 529727 | 16814.6 |
| s-(hydroxymethyl)glutathione dehydrogenase/class iii alcohol dehydrogenase | RCA23_RS02535 | Not Available | Positive | 529799 - 530911 | 38996.2 |
| aec family transporter | RCA23_RS02540 | Not Available | Positive | 531026 - 531961 | 32643.3 |
| s-formylglutathione hydrolase | RCA23_RS02545 | Not Available | Positive | 532063 - 532896 | 30378.7 |
| si-specific nad(p)(+) transhydrogenase | RCA23_RS02550 | Not Available | Positive | 532900 - 534324 | 52395.9 |
| yaii/yqxd family protein | RCA23_RS02555 | Not Available | Positive | 534321 - 534755 | 15277.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
