Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sdr family oxidoreductase | RCA23_RS02460 | Not Available | Positive | 515444 - 516199 | 26113.3 |
| nad(p)/fad-dependent oxidoreductase | RCA23_RS02465 | Not Available | Negative | 516226 - 517557 | 47770.1 |
| trimethylamine methyltransferase family protein | RCA23_RS02470 | Not Available | Negative | 517560 - 519110 | 57241.3 |
| aldehyde dehydrogenase | RCA23_RS02475 | Not Available | Negative | 519152 - 520642 | 53022.3 |
| dihydrodipicolinate synthase family protein | RCA23_RS02480 | Not Available | Negative | 520639 - 521547 | 32948.8 |
| gntr family transcriptional regulator | RCA23_RS02485 | Not Available | Negative | 521537 - 522241 | 26158.6 |
| 2og-fe(ii) oxygenase | RCA23_RS02490 | Not Available | Negative | 522333 - 523118 | 29585.1 |
| 3-isopropylmalate dehydrogenase | RCA23_RS02495 | Not Available | Negative | 523202 - 524308 | 39595.3 |
| endonuclease/exonuclease/phosphatase family protein | RCA23_RS02500 | Not Available | Negative | 524363 - 525496 | 42011.2 |
| 3-isopropylmalate dehydratase small subunit | RCA23_RS02505 | Not Available | Negative | 525626 - 526231 | 22289.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
