Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-deoxy-d-manno-octulosonic acid transferase | RCA23_RS00205 | Not Available | Positive | 44819 - 45955 | 40888.7 |
| tetraacyldisaccharide 4'-kinase | RCA23_RS00210 | Not Available | Positive | 45952 - 46938 | 35023.8 |
| dsba family protein | RCA23_RS00215 | Not Available | Negative | 46941 - 47600 | 24159.6 |
| duf721 domain-containing protein | RCA23_RS00220 | Not Available | Negative | 47602 - 48123 | 18585.6 |
| a/g-specific adenine glycosylase | RCA23_RS00225 | Not Available | Positive | 48220 - 49254 | 37613.3 |
| alkane 1-monooxygenase | RCA23_RS00230 | Not Available | Positive | 49425 - 50567 | 44129.8 |
| site-specific dna-methyltransferase | RCA23_RS00235 | Not Available | Negative | 50654 - 51766 | 41601.3 |
| ribonuclease hii | RCA23_RS00240 | Not Available | Negative | 51857 - 52492 | 22799.7 |
| exodeoxyribonuclease iii | RCA23_RS00245 | Not Available | Positive | 52617 - 53405 | 29270.7 |
| thioredoxin | RCA23_RS00250 | Not Available | Positive | 53466 - 54383 | 31885.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
