Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| adenine deaminase | RCA23_RS02310 | Not Available | Positive | 485529 - 487343 | 63994.9 |
| amp nucleosidase | RCA23_RS02315 | Not Available | Positive | 487330 - 488805 | 54444.8 |
| hu family dna-binding protein | RCA23_RS02320 | Not Available | Positive | 488927 - 489214 | 10000.3 |
| dmt family transporter | RCA23_RS02325 | Not Available | Positive | 489360 - 490229 | 30771.1 |
| cytochrome c biogenesis ccda family protein | RCA23_RS02330 | Not Available | Positive | 490285 - 491016 | 25398.9 |
| thioredoxin family protein | RCA23_RS02335 | Not Available | Positive | 491039 - 491449 | 14898.1 |
| tigr04282 family arsenosugar biosynthesis glycosyltransferase | RCA23_RS02340 | Not Available | Negative | 491446 - 492015 | 21243.7 |
| succinyl-diaminopimelate desuccinylase | RCA23_RS02345 | Not Available | Negative | 492038 - 493168 | 40492.9 |
| hypothetical protein | RCA23_RS02350 | Not Available | Negative | 493168 - 493515 | 12533.8 |
| 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferase | RCA23_RS02355 | Not Available | Negative | 493591 - 494418 | 29444.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
