Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutathione s-transferase n-terminal domain-containing protein | RCA23_RS02210 | Not Available | Positive | 467087 - 467752 | 25504.5 |
| trna epoxyqueuosine(34) reductase queg | RCA23_RS02215 | Not Available | Positive | 467733 - 468776 | 37824.6 |
| duf4198 domain-containing protein | RCA23_RS02220 | Not Available | Negative | 468773 - 469585 | 30075.6 |
| hupe/urej family protein | RCA23_RS02225 | Not Available | Positive | 469584 - 470741 | 41420.1 |
| branched-chain amino acid aminotransferase | RCA23_RS02230 | Not Available | Negative | 470840 - 471709 | 31971.0 |
| marr family winged helix-turn-helix transcriptional regulator | RCA23_RS02235 | Not Available | Positive | 471872 - 472384 | 19129.9 |
| response regulator | RCA23_RS02240 | Not Available | Positive | 472381 - 473094 | 26761.6 |
| histone deacetylase family protein | RCA23_RS02245 | Not Available | Positive | 473091 - 474020 | 32904.0 |
| exodeoxyribonuclease vii small subunit | RCA23_RS02250 | Not Available | Positive | 474013 - 474255 | 8332.85 |
| farnesyl diphosphate synthase | RCA23_RS02255 | Not Available | Positive | 474350 - 475159 | 28223.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
