Planktomarina temperata RCA23

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Planktomarina

Description

Planktomarina temperata RCA23 is a Gram-negative, non-spore-forming rod-shaped bacterium that thrives in aerobic environments, with an optimal growth temperature of 25.0°C. This marine microbe is part of the diverse community of microorganisms found in coastal waters, where it likely plays a role in nutrient cycling and the degradation of organic matter. As a member of the Planktomarina genus, P. temperata RCA23 is adapted to planktonic lifestyles, which may contribute to its ecological significance in marine ecosystems. The rod shape of this bacterium may enhance its motility and nutrient uptake, facilitating its survival in the dynamic and competitive environments of coastal waters. Given its aerobic nature, Planktomarina temperata RCA23 relies on oxygen for its metabolic processes, indicating its potential involvement in aerobic decomposition and interactions with other microbial communities. Understanding its physiological traits could provide insights into the roles of similar marine bacteria in biogeochemical cycles, particularly in relation to organic matter processing and the overall health of marine ecosystems. Future research may reveal more about its specific interactions within these environments, emphasizing the importance of such microbes in maintaining ecological balance in marine habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusPlanktomarina
SpeciesPlanktomarina temperata
StrainRCA23

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature25
Temperature rangemesophilic
HabitatNorwegian fjord
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Planktomarina temperata RCA23 chromosome, complete genome.

Gene Summary

Adenine Count

759356 bp

Thymine Count

765055 bp

Guanine Count

886270 bp

Cytosine Count

877441 bp

Genome Length

3288122 bp

Protein-coding Genes

3150 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glutathione s-transferase n-terminal domain-containing proteinRCA23_RS02210Not AvailablePositive467087 - 46775225504.5
trna epoxyqueuosine(34) reductase quegRCA23_RS02215Not AvailablePositive467733 - 46877637824.6
duf4198 domain-containing proteinRCA23_RS02220Not AvailableNegative468773 - 46958530075.6
hupe/urej family proteinRCA23_RS02225Not AvailablePositive469584 - 47074141420.1
branched-chain amino acid aminotransferaseRCA23_RS02230Not AvailableNegative470840 - 47170931971.0
marr family winged helix-turn-helix transcriptional regulatorRCA23_RS02235Not AvailablePositive471872 - 47238419129.9
response regulatorRCA23_RS02240Not AvailablePositive472381 - 47309426761.6
histone deacetylase family proteinRCA23_RS02245Not AvailablePositive473091 - 47402032904.0
exodeoxyribonuclease vii small subunitRCA23_RS02250Not AvailablePositive474013 - 4742558332.85
farnesyl diphosphate synthaseRCA23_RS02255Not AvailablePositive474350 - 47515928223.9

Displaying genes 451 – 460 of 3201 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.