Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| site-specific integrase | RCA23_RS02160 | Not Available | Negative | 453746 - 454720 | 36362.9 |
| gnat family n-acetyltransferase | RCA23_RS02165 | Not Available | Positive | 455125 - 455838 | 27504.6 |
| duf2306 domain-containing protein | RCA23_RS02170 | Not Available | Negative | 456159 - 456557 | 14991.9 |
| duf6538 domain-containing protein | RCA23_RS02175 | Not Available | Negative | 456643 - 457797 | 42998.4 |
| Trna-leu | Not Available | Not Available | Positive | 457859 - 457944 | Not Available |
| complex i ndufa9 subunit family protein | RCA23_RS02185 | Not Available | Positive | 458139 - 459119 | 35071.8 |
| undecaprenyl-diphosphate phosphatase | RCA23_RS02190 | Not Available | Negative | 459124 - 459936 | 28804.2 |
| fad-dependent oxidoreductase | RCA23_RS02195 | Not Available | Positive | 460145 - 461578 | 51570.0 |
| glutamate synthase large subunit | RCA23_RS02200 | Not Available | Positive | 461645 - 466186 | 163888.0 |
| monofunctional biosynthetic peptidoglycan transglycosylase | RCA23_RS02205 | Not Available | Positive | 466290 - 467033 | 27857.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
