Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cupin domain-containing protein | RCA23_RS02110 | Not Available | Negative | 443222 - 443599 | 13145.3 |
| hypothetical protein | RCA23_RS02115 | Not Available | Negative | 444101 - 444724 | 22136.4 |
| duf3127 domain-containing protein | RCA23_RS02120 | Not Available | Negative | 444918 - 445304 | 14430.8 |
| aaa family atpase | RCA23_RS02125 | Not Available | Negative | 445509 - 446438 | 34780.7 |
| hypothetical protein | RCA23_RS02130 | Not Available | Negative | 446703 - 446999 | 10480.8 |
| m10 family metallopeptidase | RCA23_RS02135 | Not Available | Positive | 447544 - 449187 | 58843.3 |
| lrp/asnc ligand binding domain-containing protein | RCA23_RS02140 | Not Available | Negative | 449230 - 449466 | 9001.87 |
| is481 family transposase | RCA23_RS02145 | Not Available | Negative | 449781 - 450860 | 41054.3 |
| yjbh domain-containing protein | RCA23_RS16695 | Not Available | Negative | 452294 - 452398 | 4145.2 |
| potassium channel family protein | RCA23_RS02155 | Not Available | Negative | 452530 - 453456 | 35119.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
