Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetyl-coa carboxylase biotin carboxylase subunit | RCA23_RS01960 | Not Available | Negative | 411004 - 412356 | 48877.2 |
| acetyl-coa carboxylase biotin carboxyl carrier protein | RCA23_RS01965 | Not Available | Negative | 412356 - 412838 | 16534.9 |
| acetate--coa ligase | RCA23_RS01970 | Not Available | Negative | 413026 - 414969 | 70430.2 |
| abc transporter atp-binding protein | RCA23_RS01975 | Not Available | Negative | 415037 - 415759 | 26239.5 |
| abc transporter atp-binding protein | RCA23_RS01980 | Not Available | Negative | 415771 - 416529 | 27687.8 |
| branched-chain amino acid abc transporter permease | RCA23_RS01985 | Not Available | Negative | 416541 - 417743 | 43849.4 |
| branched-chain amino acid abc transporter permease | RCA23_RS01990 | Not Available | Negative | 417748 - 418779 | 37081.5 |
| substrate-binding protein | RCA23_RS01995 | Not Available | Negative | 418885 - 420231 | 47420.9 |
| helix-turn-helix domain-containing protein | RCA23_RS02000 | Not Available | Positive | 420457 - 421773 | 48089.2 |
| response regulator transcription factor | RCA23_RS02005 | Not Available | Positive | 421836 - 422207 | 13557.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
