Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter substrate-binding protein | RCA23_RS01910 | Not Available | Negative | 402258 - 403226 | 34051.9 |
| fatty acid desaturase | RCA23_RS01915 | Not Available | Positive | 403563 - 404708 | 43739.6 |
| caib/baif coa transferase family protein | RCA23_RS01920 | Not Available | Negative | 404717 - 405832 | 40205.0 |
| glyceraldehyde 3-phosphate dehydrogenase nad-binding domain-containing protein | RCA23_RS01925 | Not Available | Positive | 405960 - 406949 | 35081.2 |
| atp-dependent clp protease proteolytic subunit | RCA23_RS01930 | Not Available | Positive | 407067 - 407687 | 22959.6 |
| atp-dependent clp protease atp-binding subunit clpx | RCA23_RS01935 | Not Available | Positive | 407812 - 409077 | 45677.1 |
| nadh:ubiquinone oxidoreductase subunit ndufa12 | RCA23_RS01940 | Not Available | Positive | 409209 - 409592 | 14467.8 |
| outer membrane lipid asymmetry maintenance protein mlad | RCA23_RS01945 | Not Available | Positive | 409597 - 410043 | 15280.2 |
| duf2155 domain-containing protein | RCA23_RS01950 | Not Available | Positive | 410043 - 410402 | 13410.1 |
| leucyl/phenylalanyl-trna--protein transferase | RCA23_RS01955 | Not Available | Negative | 410366 - 411007 | 23602.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
