Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thiamine abc transporter substrate binding subunit | RCA23_RS00155 | Not Available | Positive | 34661 - 35638 | 34809.8 |
| thiamine/thiamine pyrophosphate abc transporter permease thip | RCA23_RS00160 | Not Available | Positive | 35638 - 37182 | 54849.2 |
| atp-binding cassette domain-containing protein | RCA23_RS00165 | Not Available | Positive | 37166 - 37867 | 24916.3 |
| cytochrome c1 | RCA23_RS00170 | Not Available | Negative | 37920 - 38720 | 29024.5 |
| cytochrome b n-terminal domain-containing protein | RCA23_RS00175 | Not Available | Negative | 38735 - 40072 | 49570.1 |
| ubiquinol-cytochrome c reductase iron-sulfur subunit | RCA23_RS00180 | Not Available | Negative | 40072 - 40644 | 20379.9 |
| glutathione s-transferase n-terminal domain-containing protein | RCA23_RS00185 | Not Available | Negative | 40837 - 41442 | 22267.3 |
| inositol 2-dehydrogenase | RCA23_RS00190 | Not Available | Negative | 41495 - 42502 | 36124.9 |
| tldd/pmba family protein | RCA23_RS00195 | Not Available | Positive | 42704 - 44050 | 46796.4 |
| 3'(2'),5'-bisphosphate nucleotidase cysq | RCA23_RS00200 | Not Available | Positive | 44043 - 44810 | 26945.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
