Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lytic transglycosylase domain-containing protein | RCA23_RS01810 | Not Available | Positive | 382675 - 384669 | 73556.3 |
| dmt family transporter | RCA23_RS01815 | Not Available | Negative | 384717 - 385589 | 31336.2 |
| trna (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase mnmd | RCA23_RS01820 | Not Available | Negative | 385586 - 386248 | 24365.7 |
| fad-binding oxidoreductase | RCA23_RS01825 | Not Available | Positive | 386288 - 387352 | 37574.2 |
| voc family protein | RCA23_RS01830 | Not Available | Positive | 387342 - 387752 | 14626.5 |
| lin0512 family protein | RCA23_RS01835 | Not Available | Negative | 387773 - 388138 | 13122.6 |
| lin0512 family protein | RCA23_RS01840 | Not Available | Negative | 388135 - 388482 | 12276.0 |
| cob(i)yrinic acid a,c-diamide adenosyltransferase | RCA23_RS01845 | Not Available | Negative | 388503 - 389111 | 22854.8 |
| hypothetical protein | RCA23_RS01850 | Not Available | Positive | 389202 - 389606 | 14998.4 |
| abc transporter atp-binding protein | RCA23_RS01855 | Not Available | Negative | 389629 - 390600 | 35575.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
