Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hlyd family type i secretion periplasmic adaptor subunit | RCA23_RS01765 | Not Available | Negative | 372132 - 373421 | 47505.5 |
| atp-binding cassette domain-containing protein | RCA23_RS01770 | Not Available | Negative | 373411 - 374826 | 50246.7 |
| hypothetical protein | RCA23_RS16375 | Not Available | Negative | 374874 - 375137 | 9815.3 |
| vacj family lipoprotein | RCA23_RS01775 | Not Available | Positive | 375269 - 376000 | 26612.6 |
| phospholipid-binding protein mlac | RCA23_RS01780 | Not Available | Positive | 375984 - 376589 | 21919.6 |
| transglycosylase domain-containing protein | RCA23_RS01785 | Not Available | Negative | 376654 - 378789 | 77152.7 |
| aromatic amino acid transaminase | RCA23_RS01790 | Not Available | Negative | 378971 - 380155 | 42482.0 |
| 3-mercaptopyruvate sulfurtransferase | RCA23_RS01795 | Not Available | Negative | 380155 - 381012 | 31482.4 |
| ssra-binding protein smpb | RCA23_RS01800 | Not Available | Negative | 381100 - 381576 | 18386.2 |
| 4-hydroxy-tetrahydrodipicolinate synthase | RCA23_RS01805 | Not Available | Negative | 381680 - 382552 | 30170.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
