Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna/rna nuclease sfsa | RCA23_RS01715 | Not Available | Positive | 363392 - 364114 | 26737.3 |
| type i methionyl aminopeptidase | RCA23_RS01720 | Not Available | Positive | 364191 - 365000 | 29208.1 |
| dead/deah box helicase | RCA23_RS01725 | Not Available | Negative | 365054 - 366601 | 55050.7 |
| 16s rrna (guanine(966)-n(2))-methyltransferase rsmd | RCA23_RS01730 | Not Available | Negative | 366829 - 367398 | 20596.7 |
| nad(p)/fad-dependent oxidoreductase | RCA23_RS01735 | Not Available | Negative | 367395 - 368600 | 42847.4 |
| peroxiredoxin | RCA23_RS01740 | Not Available | Positive | 368681 - 369172 | 17448.8 |
| 4a-hydroxytetrahydrobiopterin dehydratase | RCA23_RS01745 | Not Available | Negative | 369326 - 369613 | 10760.7 |
| gnat family n-acetyltransferase | RCA23_RS01750 | Not Available | Negative | 369610 - 370797 | 44459.1 |
| glycerophosphodiester phosphodiesterase family protein | RCA23_RS01755 | Not Available | Negative | 370849 - 371604 | 26854.9 |
| rida family protein | RCA23_RS01760 | Not Available | Negative | 371601 - 372065 | 15808.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
