Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cca trna nucleotidyltransferase | RCA23_RS15640 | Not Available | Positive | 3245425 - 3246585 | 41814.0 |
| abc transporter atp-binding protein | RCA23_RS15645 | Not Available | Positive | 3246667 - 3248505 | 67849.3 |
| class i sam-dependent rna methyltransferase | RCA23_RS15650 | Not Available | Positive | 3248505 - 3249719 | 43644.4 |
| ion transporter | RCA23_RS15655 | Not Available | Positive | 3249726 - 3250487 | 28416.5 |
| murein l,d-transpeptidase family protein | RCA23_RS15660 | Not Available | Positive | 3250547 - 3251041 | 18645.6 |
| cap domain-containing protein | RCA23_RS15665 | Not Available | Negative | 3251068 - 3251547 | 17490.6 |
| l,d-transpeptidase | RCA23_RS15670 | Not Available | Positive | 3251740 - 3252339 | 22491.7 |
| hypothetical protein | RCA23_RS15675 | Not Available | Positive | 3252485 - 3252670 | 6035.57 |
| ferrochelatase | RCA23_RS15680 | Not Available | Negative | 3252730 - 3253788 | 40111.5 |
| hypothetical protein | RCA23_RS15685 | Not Available | Negative | 3253839 - 3254654 | 29367.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
