Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| smr/muts family protein | RCA23_RS15490 | Not Available | Negative | 3214965 - 3215543 | 21296.4 |
| murein transglycosylase a | RCA23_RS15495 | Not Available | Negative | 3215546 - 3216574 | 37546.9 |
| tim44/tima family putative adaptor protein | RCA23_RS15500 | Not Available | Negative | 3216571 - 3217227 | 23761.1 |
| fxsa family protein | RCA23_RS15505 | Not Available | Positive | 3217333 - 3217791 | 16466.4 |
| protein-export chaperone secb | RCA23_RS15510 | Not Available | Positive | 3217847 - 3218353 | 19308.4 |
| dna polymerase iii subunit epsilon | RCA23_RS15515 | Not Available | Negative | 3218350 - 3219045 | 25599.2 |
| dephospho-coa kinase | RCA23_RS15520 | Not Available | Negative | 3219038 - 3219631 | 21140.4 |
| shikimate dehydrogenase | RCA23_RS16930 | Not Available | Negative | 3219628 - 3221043 | 51631.0 |
| protoporphyrinogen oxidase hemj | RCA23_RS15530 | Not Available | Positive | 3221460 - 3221891 | 16467.8 |
| transcription termination factor rho | RCA23_RS15535 | Not Available | Positive | 3222015 - 3223286 | 47295.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
