Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lps export abc transporter atp-binding protein | RCA23_RS15390 | Not Available | Negative | 3192157 - 3192915 | 28267.3 |
| lpta/osta family protein | RCA23_RS15395 | Not Available | Negative | 3192915 - 3193403 | 16916.3 |
| lps export abc transporter periplasmic protein lptc | RCA23_RS16130 | Not Available | Negative | 3193412 - 3194020 | 21879.1 |
| ribonuclease d | RCA23_RS15405 | Not Available | Negative | 3194048 - 3194662 | 22707.3 |
| serine/threonine protein kinase | RCA23_RS15410 | Not Available | Positive | 3194850 - 3195968 | 43032.7 |
| fkbm family methyltransferase | RCA23_RS15415 | Not Available | Negative | 3196053 - 3196817 | 28543.6 |
| hd family hydrolase | RCA23_RS15420 | Not Available | Negative | 3196918 - 3197508 | 21613.2 |
| adenosylhomocysteinase | RCA23_RS15425 | Not Available | Positive | 3197634 - 3199025 | 50719.8 |
| actr/prra/rega family redox response regulator transcription factor | RCA23_RS15430 | Not Available | Negative | 3199339 - 3199890 | 20024.1 |
| sco family protein | RCA23_RS15435 | Not Available | Negative | 3199947 - 3200567 | 22400.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
