Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-ketoglutarate-dependent dioxygenase alkb | RCA23_RS15340 | Not Available | Positive | 3182187 - 3182774 | 21262.4 |
| abc transporter permease | RCA23_RS15345 | Not Available | Negative | 3182780 - 3183607 | 30455.4 |
| 3'(2'),5'-bisphosphate nucleotidase cysq | RCA23_RS15350 | Not Available | Positive | 3183719 - 3184516 | 28530.9 |
| utp--glucose-1-phosphate uridylyltransferase galu | RCA23_RS15355 | Not Available | Positive | 3184712 - 3185623 | 33170.0 |
| glycosyltransferase family 2 protein | RCA23_RS15360 | Not Available | Positive | 3185710 - 3186672 | 37227.0 |
| glycosyltransferase family 2 protein | RCA23_RS15365 | Not Available | Positive | 3186779 - 3187789 | 39358.0 |
| beta-1,6-n-acetylglucosaminyltransferase | RCA23_RS15370 | Not Available | Positive | 3187786 - 3189483 | 65140.6 |
| sulfotransferase domain-containing protein | RCA23_RS15375 | Not Available | Positive | 3189485 - 3190912 | 54646.2 |
| pts iia-like nitrogen regulatory protein ptsn | RCA23_RS15380 | Not Available | Negative | 3190909 - 3191373 | 16622.2 |
| ribosome hibernation-promoting factor, hpf/yfia family | RCA23_RS15385 | Not Available | Negative | 3191398 - 3191964 | 20829.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
