Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rc-lh1 core complex protein pufx | RCA23_RS15140 | Not Available | Positive | 3140323 - 3140562 | 8944.88 |
| 1-deoxy-d-xylulose-5-phosphate synthase | RCA23_RS15145 | Not Available | Positive | 3140748 - 3142640 | 65843.9 |
| isopentenyl-diphosphate delta-isomerase | RCA23_RS15150 | Not Available | Negative | 3142659 - 3143177 | 19625.6 |
| geranylgeranyl diphosphate reductase | RCA23_RS15155 | Not Available | Negative | 3143177 - 3144355 | 42866.7 |
| bcd family mfs transporter | RCA23_RS15160 | Not Available | Negative | 3144358 - 3145650 | 45556.6 |
| chlorophyll synthase chlg | RCA23_RS15165 | Not Available | Negative | 3145647 - 3146546 | 32389.3 |
| c-type cytochrome | RCA23_RS15170 | Not Available | Positive | 3146699 - 3147133 | 15256.4 |
| uroporphyrinogen decarboxylase | RCA23_RS15175 | Not Available | Negative | 3147191 - 3148225 | 37226.9 |
| hydroxymethylbilane synthase | RCA23_RS15180 | Not Available | Positive | 3148323 - 3149273 | 34468.6 |
| nad(p)h-binding protein | RCA23_RS15185 | Not Available | Positive | 3149254 - 3150213 | 34139.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
