Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-oxo-hept-4-ene-1,7-dioate hydratase | RCA23_RS14935 | Not Available | Negative | 3101779 - 3102576 | 28815.5 |
| fumarylacetoacetate hydrolase family protein | RCA23_RS14940 | Not Available | Negative | 3102573 - 3103430 | 31149.7 |
| 5-carboxymethyl-2-hydroxymuconate delta-isomerase | RCA23_RS14945 | Not Available | Negative | 3103427 - 3103834 | 14829.9 |
| marr family winged helix-turn-helix transcriptional regulator | RCA23_RS14950 | Not Available | Positive | 3104009 - 3104446 | 17112.0 |
| 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component | RCA23_RS14955 | Not Available | Positive | 3104443 - 3105903 | 53777.2 |
| abc transporter atp-binding protein | RCA23_RS14960 | Not Available | Negative | 3105926 - 3106978 | 38228.1 |
| mannitol dehydrogenase family protein | RCA23_RS14965 | Not Available | Negative | 3106966 - 3108387 | 52431.5 |
| helix-turn-helix domain-containing protein | RCA23_RS14970 | Not Available | Negative | 3108384 - 3109277 | 33649.3 |
| carbohydrate abc transporter permease | RCA23_RS14975 | Not Available | Negative | 3109343 - 3110179 | 31109.5 |
| carbohydrate abc transporter permease | RCA23_RS14980 | Not Available | Negative | 3110190 - 3111128 | 34864.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
