Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| leucine--trna ligase | RCA23_RS14880 | Not Available | Positive | 3091287 - 3093845 | 94286.2 |
| lps assembly lipoprotein lpte | RCA23_RS14885 | Not Available | Positive | 3093904 - 3094302 | 14585.2 |
| dna polymerase iii subunit delta | RCA23_RS14890 | Not Available | Positive | 3094299 - 3095324 | 36514.3 |
| glutathione s-transferase family protein | RCA23_RS14895 | Not Available | Positive | 3095325 - 3095912 | 21889.4 |
| tigr03862 family flavoprotein | RCA23_RS14900 | Not Available | Negative | 3095885 - 3097108 | 43300.8 |
| porin | RCA23_RS14910 | Not Available | Negative | 3097311 - 3098243 | 31394.6 |
| yggs family pyridoxal phosphate-dependent enzyme | RCA23_RS14915 | Not Available | Positive | 3098481 - 3099143 | 23834.9 |
| l,d-transpeptidase | RCA23_RS14920 | Not Available | Negative | 3099150 - 3099644 | 18182.0 |
| gtp cyclohydrolase ii | RCA23_RS14925 | Not Available | Negative | 3099641 - 3100696 | 37729.8 |
| response regulator transcription factor | RCA23_RS14930 | Not Available | Positive | 3100840 - 3101526 | 25807.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
