Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| heparinase ii/iii family protein | RCA23_RS14630 | Not Available | Positive | 3037675 - 3039378 | 62085.3 |
| bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/imp cyclohydrolase | RCA23_RS14635 | Not Available | Positive | 3039420 - 3041006 | 55774.4 |
| signal peptidase ii | RCA23_RS14640 | Not Available | Positive | 3041008 - 3041490 | 17410.6 |
| m16 family metallopeptidase | RCA23_RS14645 | Not Available | Positive | 3041564 - 3042898 | 48919.3 |
| m16 family metallopeptidase | RCA23_RS14650 | Not Available | Positive | 3042895 - 3044199 | 46082.9 |
| dna mismatch repair endonuclease mutl | RCA23_RS14655 | Not Available | Positive | 3044234 - 3046045 | 64836.6 |
| dna recombination protein rmuc | RCA23_RS14660 | Not Available | Positive | 3046042 - 3047181 | 41705.6 |
| chrr family anti-sigma-e factor | RCA23_RS14665 | Not Available | Negative | 3047176 - 3047817 | 22433.9 |
| sigma-70 family rna polymerase sigma factor | RCA23_RS14670 | Not Available | Negative | 3047823 - 3048479 | 24375.1 |
| nad(p)/fad-dependent oxidoreductase | RCA23_RS14675 | Not Available | Positive | 3048595 - 3049896 | 48026.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
