Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter substrate-binding protein | RCA23_RS14580 | Not Available | Negative | 3027146 - 3028426 | 45931.6 |
| branched-chain amino acid abc transporter permease | RCA23_RS14585 | Not Available | Negative | 3028491 - 3029567 | 38954.5 |
| branched-chain amino acid abc transporter permease | RCA23_RS14590 | Not Available | Negative | 3029630 - 3030631 | 35775.9 |
| abc transporter atp-binding protein | RCA23_RS14595 | Not Available | Negative | 3030699 - 3031517 | 30421.8 |
| amp-binding protein | RCA23_RS14600 | Not Available | Negative | 3031569 - 3033530 | 72639.1 |
| trna pseudouridine(55) synthase trub | RCA23_RS14605 | Not Available | Negative | 3033706 - 3034611 | 32727.8 |
| 30s ribosome-binding factor rbfa | RCA23_RS14610 | Not Available | Negative | 3034663 - 3035103 | 16348.3 |
| 4-hydroxy-tetrahydrodipicolinate reductase | RCA23_RS14615 | Not Available | Positive | 3035183 - 3035992 | 28097.8 |
| duf1674 domain-containing protein | RCA23_RS14620 | Not Available | Negative | 3036039 - 3036218 | 6388.5 |
| rsmb/nop family class i sam-dependent rna methyltransferase | RCA23_RS14625 | Not Available | Positive | 3036262 - 3037596 | 47970.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
