Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent chaperone clpb | RCA23_RS14530 | Not Available | Negative | 3017549 - 3020158 | 94928.6 |
| orotidine-5'-phosphate decarboxylase | RCA23_RS14535 | Not Available | Positive | 3020382 - 3021098 | 24788.1 |
| nfed family protein | RCA23_RS14540 | Not Available | Negative | 3021095 - 3021376 | 9827.49 |
| spfh domain-containing protein | RCA23_RS14545 | Not Available | Negative | 3021376 - 3022266 | 32304.8 |
| dna polymerase iv | RCA23_RS14550 | Not Available | Positive | 3022399 - 3023655 | 46088.8 |
| n-formylglutamate amidohydrolase | RCA23_RS14555 | Not Available | Negative | 3023660 - 3024517 | 31237.5 |
| Trna-val | Not Available | Not Available | Positive | 3024712 - 3024786 | Not Available |
| type b 50s ribosomal protein l36 | RCA23_RS16330 | Not Available | Positive | 3024835 - 3024960 | 4954.22 |
| phenylacetate--coa ligase family protein | RCA23_RS14570 | Not Available | Negative | 3025031 - 3026236 | 42747.6 |
| abc transporter atp-binding protein | RCA23_RS14575 | Not Available | Negative | 3026262 - 3027086 | 30189.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
