Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| marr family winged helix-turn-helix transcriptional regulator | RCA23_RS14280 | Not Available | Negative | 2961043 - 2961528 | 18312.1 |
| succinate dehydrogenase assembly factor 2 | RCA23_RS14285 | Not Available | Negative | 2961600 - 2961866 | 9992.19 |
| multiprotein-bridging factor 1 family protein | RCA23_RS14290 | Not Available | Negative | 2961863 - 2962255 | 14621.6 |
| pyridoxal phosphate-dependent aminotransferase | RCA23_RS14295 | Not Available | Positive | 2962344 - 2963546 | 43184.4 |
| hypothetical protein | RCA23_RS14300 | Not Available | Positive | 2963561 - 2963965 | 15651.9 |
| mate family efflux transporter | RCA23_RS14305 | Not Available | Negative | 2963962 - 2965311 | 48636.6 |
| dna topoisomerase iv subunit b | RCA23_RS14310 | Not Available | Positive | 2965449 - 2967407 | 71360.0 |
| dmt family transporter | RCA23_RS14315 | Not Available | Positive | 2967432 - 2967866 | 14700.9 |
| ldh family oxidoreductase | RCA23_RS14320 | Not Available | Negative | 2967876 - 2968865 | 33280.6 |
| abc transporter atp-binding protein | RCA23_RS14325 | Not Available | Negative | 2968946 - 2969623 | 24359.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
