Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr substrate-binding domain-containing protein | RCA23_RS01370 | Not Available | Negative | 298930 - 299907 | 36612.1 |
| gntr family transcriptional regulator | RCA23_RS01375 | Not Available | Negative | 300040 - 300711 | 24929.1 |
| trap transporter substrate-binding protein | RCA23_RS01380 | Not Available | Positive | 300938 - 301951 | 36830.4 |
| trap transporter small permease subunit | RCA23_RS01385 | Not Available | Positive | 302060 - 302872 | 30717.3 |
| trap transporter large permease subunit | RCA23_RS01390 | Not Available | Positive | 302872 - 304467 | 57494.3 |
| phosphogluconate dehydrogenase c-terminal domain-containing protein | RCA23_RS01395 | Not Available | Positive | 304492 - 305322 | 29662.8 |
| four-carbon acid sugar kinase family protein | RCA23_RS01400 | Not Available | Positive | 305336 - 306664 | 46457.1 |
| ribulose-bisphosphate carboxylase large subunit family protein | RCA23_RS01405 | Not Available | Positive | 306661 - 307920 | 44533.3 |
| d-erythronate dehydrogenase | RCA23_RS01410 | Not Available | Negative | 307917 - 308882 | 34880.9 |
| nad(p)-dependent oxidoreductase | RCA23_RS01415 | Not Available | Positive | 309016 - 309939 | 32729.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
