Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fatty acid desaturase | RCA23_RS13835 | Not Available | Positive | 2867742 - 2868770 | 38833.7 |
| 3-methyl-2-oxobutanoate hydroxymethyltransferase | RCA23_RS13840 | Not Available | Positive | 2868772 - 2869620 | 31278.9 |
| non-heme iron oxygenase ferredoxin subunit | RCA23_RS13845 | Not Available | Positive | 2869651 - 2869959 | 11457.5 |
| Trna-met | Not Available | Not Available | Positive | 2870494 - 2870570 | Not Available |
| helix-turn-helix domain-containing protein | RCA23_RS16100 | Not Available | Negative | 2870697 - 2871485 | 30548.0 |
| agmatinase | RCA23_RS13860 | Not Available | Positive | 2872169 - 2873122 | 34275.5 |
| sugar phosphate isomerase/epimerase family protein | RCA23_RS13865 | Not Available | Negative | 2873130 - 2873972 | 32164.6 |
| bifunctional transcriptional activator/dna repair enzyme adaa | RCA23_RS13870 | Not Available | Positive | 2874311 - 2875399 | 39908.2 |
| fatty acid desaturase | RCA23_RS13875 | Not Available | Negative | 2875367 - 2876347 | 37502.7 |
| acyl-coa synthetase | RCA23_RS13880 | Not Available | Negative | 2876440 - 2878317 | 67889.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
