Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aldehyde dehydrogenase | RCA23_RS13785 | Not Available | Positive | 2855926 - 2857404 | 53452.7 |
| lyse family transporter | RCA23_RS13790 | Not Available | Negative | 2857418 - 2857987 | 20292.4 |
| trap transporter large permease subunit | RCA23_RS13795 | Not Available | Negative | 2858080 - 2859546 | 52235.4 |
| trap transporter small permease subunit | RCA23_RS13800 | Not Available | Negative | 2859546 - 2860109 | 20630.7 |
| trap transporter substrate-binding protein | RCA23_RS13805 | Not Available | Negative | 2860195 - 2861235 | 37898.0 |
| lysr family transcriptional regulator | RCA23_RS13810 | Not Available | Negative | 2861444 - 2862343 | 32908.5 |
| mandelate racemase/muconate lactonizing enzyme family protein | RCA23_RS13815 | Not Available | Negative | 2863029 - 2864132 | 39178.1 |
| alcohol dehydrogenase family protein | RCA23_RS13820 | Not Available | Negative | 2864129 - 2865223 | 38995.4 |
| lysr family transcriptional regulator | RCA23_RS13825 | Not Available | Negative | 2865992 - 2866864 | 32084.2 |
| class ii aldolase and adducin n-terminal domain-containing protein | RCA23_RS13830 | Not Available | Positive | 2866984 - 2867739 | 27984.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
