Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-threonylcarbamoyladenylate synthase | RCA23_RS13630 | Not Available | Negative | 2823791 - 2824420 | 21651.4 |
| hypothetical protein | RCA23_RS13635 | Not Available | Negative | 2824417 - 2825070 | 22972.4 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex atpase subunit type 1 tsae | RCA23_RS13640 | Not Available | Negative | 2825061 - 2825543 | 17850.3 |
| hypothetical protein | RCA23_RS16600 | Not Available | Positive | 2825637 - 2825801 | 5528.54 |
| hydroxypyruvate isomerase family protein | RCA23_RS13645 | Not Available | Positive | 2825795 - 2826562 | 27396.6 |
| tyrosine-type recombinase/integrase | RCA23_RS13650 | Not Available | Positive | 2826823 - 2828073 | 47265.0 |
| hypothetical protein | RCA23_RS13655 | Not Available | Positive | 2828066 - 2828713 | 24224.2 |
| helix-turn-helix transcriptional regulator | RCA23_RS13660 | Not Available | Positive | 2828793 - 2828993 | 7958.58 |
| hypothetical protein | RCA23_RS13665 | Not Available | Positive | 2828990 - 2829565 | 21710.9 |
| dna polymerase | RCA23_RS13670 | Not Available | Positive | 2829565 - 2831313 | 65159.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
