Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Paracoccaceae
Genus
Planktomarina
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Paracoccaceae |
| Genus | Planktomarina |
| Species | Planktomarina temperata |
| Strain | RCA23 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Norwegian fjord |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
759356 bp
Thymine Count
765055 bp
Guanine Count
886270 bp
Cytosine Count
877441 bp
Genome Length
3288122 bp
Protein-coding Genes
3150 genes
Non-Coding Genes
51 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hggxstg domain-containing protein | RCA23_RS13515 | Not Available | Negative | 2799357 - 2799713 | 13036.7 |
| type ii toxin-antitoxin system rele/pare family toxin | RCA23_RS13530 | Not Available | Positive | 2800680 - 2800934 | 9665.87 |
| helix-turn-helix domain-containing protein | RCA23_RS13535 | Not Available | Positive | 2800940 - 2801293 | 12988.7 |
| hypothetical protein | RCA23_RS13540 | Not Available | Negative | 2801900 - 2802169 | 9424.16 |
| duf6447 family protein | RCA23_RS13545 | Not Available | Negative | 2802343 - 2802543 | 7279.58 |
| beta strand repeat-containing protein | RCA23_RS13550 | Not Available | Negative | 2802786 - 2806319 | 112936.0 |
| s-layer family protein | RCA23_RS13560 | Not Available | Negative | 2806427 - 2809639 | 102584.0 |
| tolc family protein | RCA23_RS13565 | Not Available | Positive | 2809943 - 2811319 | 48845.4 |
| type i secretion system permease/atpase | RCA23_RS13570 | Not Available | Positive | 2811316 - 2813484 | 78436.9 |
| hlyd family type i secretion periplasmic adaptor subunit | RCA23_RS13575 | Not Available | Positive | 2813500 - 2814810 | 48128.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
